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You can run queries on whole lists of data. Create lists from the results of a query or by uploading identifiers. Click on a list to view graphs and summaries in a list analysis page, if you log in you can save lists permanently.

Example lists (9 total):

experimentally verified site-specific TFs (171 Genes)
Transcription factors with experimental evidence for both DNA-binding and transcriptional regulatory function.
proteins involved in chromatin-related processes (160 Genes)
Proteins (TF or non-TF) that the FlyTF curator thought to be involved in a chromatin-related process. This has not been thoroughly annotated but may serve as a hint for further investigation.
TFs with REDfly regulatory information (79 Genes)
TFs for which REDfly holds information about the regulatory regions these proteins bind to.
equivalent to release v1 - trusted TFs (294 Genes)
A list of experimentally verified TFs, definitive DNA-binding factors and predicted TFs with a canonical DNA-binding domain (excluding C2H2 zinc fingers).
all curated proteins (1168 Genes)
All proteins curated by the FlyTF/FlyBase curators. Candidate proteins were identified on the basis of a structural domain assignment (for a DNA-binding domain) or previous Gene Ontology annotation for a TF-related term.
TFs for which a PWM is available (129 Genes)
Proteins for which a position weight matrix is available (Transfac, Dan Pollard's web site) or can easily be created (Noyes et al.: Homeobox specificities).
equivalent to release v1 - putative TFs (754 Genes)
A list of putative TFs, based on the presence of a putative DNA-binding domain (including C2H2 zinc fingers) and/or experimental evidence.

Templates

Templates are predefined queries, each has a simple form and a description. You can edit templates in the QueryBuilder, if you log in you can create new templates yourself.

Example templates (18 total):

Query Builder: You can use the flexible query interface to construct your own data mining queries. A good way to start is by editing an existing template.

Start a query from: Gene, TFCuration, PFamAnnotation

Import query from XML

If you have any questions about using this database or the data provided, or wish to contribute to the annotation of a gene (novel TF, novel evidence, etc), please get in touch.

Lists

Templates

Query Builder

If you have any questions about using this database or the data provided, or wish to contribute to the annotation of a gene (novel TF, novel evidence, etc), please get in touch.

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